PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G157927_P01
Common NameLOC100273982
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 351aa    MW: 38108.9 Da    PI: 8.4075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G157927_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.62.6e-15277301226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ktelC+ + +tG C+yGd+C+FaHg
  GRMZM2G157927_P01 277 KTELCNKWEETGACPYGDQCQFAHG 301
                        9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-18270308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10272307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225275303IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-9275302IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12277301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-11309339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-8310339IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338313341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQEALVSPAN AGRLRSALEL KPFAFGDQRL ASPRYLNLAS VAGGGGGDDA LFRCSSPFSP  60
SFGFSSPSPL ATSSTISLSP SSSSSLVGDC DCDDDADADA ATGHRLQLAR LALQYQEVAD  120
RYELCLARLA DAADEAAALR RENAELRVAN GDLTRRLALL SGIGKQAAAA AIADEVRRLR  180
FGEQKAAKER APEKPAVLPK SISVRSNDYL KMNQPQQVQA PATPAEDNRK PRASNPTTNR  240
SSRVYKGNGG DKRSEEPKEH RTAGGVELEV YNQGMLKTEL CNKWEETGAC PYGDQCQFAH  300
GVAELRPVIR HPRYKTQVCR MVLAGEVCPY GHRCHFRHTL TPAERLHLPR P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21277338566Butyrate response factor 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G157927
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G157927_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421470.0BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141840.20.0uncharacterized protein LOC100273982
SwissprotA2ZVY51e-120C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLB4FYF90.0B4FYF9_MAIZE; C3H transcription factor
STRINGGRMZM2G157927_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-48C3H family protein