PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G157927_P02
Common NameLOC100273982
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 352aa    MW: 38237 Da    PI: 8.4075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G157927_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.62.6e-15278302226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ktelC+ + +tG C+yGd+C+FaHg
  GRMZM2G157927_P02 278 KTELCNKWEETGACPYGDQCQFAHG 302
                        9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-18271309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10273308IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-9276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225276304IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12278302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-11310340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-8311340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338314342IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4314341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQEALVSPAN AGRLRSALEL KPFAFGDQRL ASPRYLNLAS VAGGGGGDDA LFRCSSPFSP  60
SFGFSSPSPL ATSSTISLSP SSSSSLVGDC DCDDDADADA ATGHRLQLAR LALQYQEVAD  120
RYELCLARLA DAADEAAALR RENAELRVAN GDLTRRLALL SGIGKQAAAA AIADEVRRLR  180
FGEQKAAKER APEKPAVLPK SISVRSNDYL KMNQPQQVQA PATPAEDNRK PRASNPTTNR  240
SSQRVYKGNG GDKRSEEPKE HRTAGGVELE VYNQGMLKTE LCNKWEETGA CPYGDQCQFA  300
HGVAELRPVI RHPRYKTQVC RMVLAGEVCP YGHRCHFRHT LTPAERLHLP RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21278339566Butyrate response factor 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G157927
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G157927_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421470.0BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672496.10.0uncharacterized protein LOC100273982 isoform X1
RefseqXP_020405180.10.0uncharacterized protein LOC100273982 isoform X1
SwissprotA2ZVY51e-122C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLB4FYF90.0B4FYF9_MAIZE; C3H transcription factor
STRINGGRMZM2G157927_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-49C3H family protein