PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G158117_P01
Common NameMYBR87, ZEAMMB73_193951, Zm.25130
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 87aa    MW: 9942.02 Da    PI: 7.3445
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G158117_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-081461347
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        W++ E + + +a + +G g   +W+++++ mg  +++++++ ++ ++
  GRMZM2G158117_P01 14 QWSQKENKMFEEALAYYGEGtpnRWDKVSSAMGGIKSAEEVRCHYENL 61
                       7********************************778********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.667762IPR017877Myb-like domain
SMARTSM007178.3E-41164IPR001005SANT/Myb domain
SuperFamilySSF466893.89E-111261IPR009057Homeodomain-like
PfamPF002498.7E-71461IPR001005SANT/Myb domain
CDDcd001671.86E-51561No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSASRSSSPN SMSQWSQKEN KMFEEALAYY GEGTPNRWDK VSSAMGGIKS AEEVRCHYEN  60
LDYDVKMIES GNVPYPKYKT QGFWTRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-20682277RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.251301e-148aerial organ| embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G158117
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G158117_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9551811e-146EU955181.1 Zea mays clone 1515957 SANT/MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147389.14e-60uncharacterized LOC100280998
SwissprotQ6NNN01e-21RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A3L6DU878e-59A0A3L6DU87_MAIZE; Protein RADIALIS-like 3
STRINGGRMZM2G158117_P012e-59(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-22RAD-like 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]