PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G158328_P01
Common NameLOC100281370
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 333aa    MW: 35834.9 Da    PI: 5.8746
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G158328_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.71.5e-20121184259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.S..TTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.d..pkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK +++s+fpr YY+C+++   +C+++k+v+++++ d  p   +++Y +eH+++
  GRMZM2G158328_P01 121 SDGYQWRKYGQKRITKSPFPRCYYKCSFHrerSCRATKQVQQCSDgDghPPQYVVMYFNEHTCD 184
                        7**************************998999********988423224578999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-23109185IPR003657WRKY domain
SuperFamilySSF1182907.72E-21116185IPR003657WRKY domain
SMARTSM007746.4E-30120185IPR003657WRKY domain
PROSITE profilePS5081116.868121186IPR003657WRKY domain
PfamPF031067.0E-22122184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQTQSRLAMS GGGGSGGSSS SSASEDEHEA VIRELTRGHE LTAQLRAEAL RALRGQGQAE  60
ATAAFILQEV SRAFTVCLSI MSSPARAPPP TMEMPAPALA PRRGRDDSIP REQRRTSSPH  120
SDGYQWRKYG QKRITKSPFP RCYYKCSFHR ERSCRATKQV QQCSDGDGHP PQYVVMYFNE  180
HTCDTAAWEP AAAAAASSGV PLDDLSRSRL QAVLGQGQQG ARALLLDERG VQEEHERRLL  240
VSSLACVLGG QQQQSPAGSG TTTAVDPAVN VGQEQEPPPP RARTPAAVDA AGEMPRIIGV  300
DVAGLDVMDY DVTDALCLAH SYDDLPDDGF PFC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.344910.0sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G158328
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G158328_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638610.0BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564870.0EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147760.10.0WRKY DNA binding domain containing protein
TrEMBLB6SUS20.0B6SUS2_MAIZE; Putative WRKY transcription factor 30
TrEMBLK4JE890.0K4JE89_MAIZE; WRKY-type transcription factor (Fragment)
STRINGGRMZM2G158328_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Representative plantOGRP1438644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.13e-16WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]