PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159032_P04
Common Namehdt103
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 259aa    MW: 28094.4 Da    PI: 4.3915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159032_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017234256223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+ksF +   L+ H +  H
  GRMZM2G159032_P04 234 PCKSCSKSFISETALQAHSKAkH 256
                        6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.032233259IPR007087Zinc finger, C2H2
PROSITE patternPS000280235256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYVKIDDQKL AIGTLSVDKN PHIQFDLIFD KEFELSHTSK TTSVFFTGYK VEQPFEEDEM  60
DLDSEDEDEE LNVPVVKENG KADEKKQKSQ EKAVAAPSKS SPDSKKSKDD DDSDEDETDD  120
SDEDETDDSD EGLSPEEGDD DSSDEDDTSD DEEEDTPTPK KPEVGKKRAA ESSVLKTPLS  180
DKKAKVATPS SQKTGGKKGA AVHVATPHPA KGKTIVNNDK SVKSPKSAPK SGVPCKSCSK  240
SFISETALQA HSKAKHGGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.8560.0aerial organ| cell culture| ear| embryo| endosperm| meristem| ovary| pollen| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159032
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159032_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530710.0EU953071.1 Zea mays clone 1380088 histone deacetylase 2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105402.21e-180histone deacetylase HDT1
SwissprotQ9M4U41e-179HDT3_MAIZE; Histone deacetylase HDT3
TrEMBLA0A096SP831e-180A0A096SP83_MAIZE; Histone deacetylase HDT3
STRINGGRMZM2G159032_P011e-180(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-14histone deacetylase 3