PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159357_P01
Common NameZm.124444
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 1287aa    MW: 143985 Da    PI: 5.2843
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159357_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1856110357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        kR   t++qle+Le+ ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k
  GRMZM2G159357_P01  56 KRMMKTPYQLEVLEKTYAVEQYPSEAMRLELSAKIGLSDRQLQMWFCHRRLKDRK 110
                        79999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-1735110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-1744110IPR009057Homeodomain-like
PROSITE profilePS5007115.98551111IPR001356Homeobox domain
SMARTSM003892.7E-1753115IPR001356Homeobox domain
CDDcd000861.48E-1456111No hitNo description
PfamPF000465.3E-1656110IPR001356Homeobox domain
PROSITE profilePS5082713.8647706IPR018501DDT domain
SMARTSM005713.3E-14647706IPR018501DDT domain
PfamPF027914.1E-14654703IPR018501DDT domain
PfamPF050661.0E-15823891IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.9E-910481089IPR028942WHIM1 domain
PfamPF156133.1E-612261270IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1287 aa     Download sequence    Send to blast
MDAGGDEDGA GKAALESTAE AATLPPASTV AVPSPVPASA PGAATGTSGS GEKPVKRMMK  60
TPYQLEVLEK TYAVEQYPSE AMRLELSAKI GLSDRQLQMW FCHRRLKDRK PPSKRQRREE  120
ESALVPVMPP PPVLPAPVMP LASSDLVVGA PGPYDEPLHP LHSRRGAGRG RSSAVPRISM  180
PDIGRRYYEP PPIMIAPPIP SMQLTQYELR VINSVESQLG EPLREDGPAL GVNFDPLPPG  240
AFGAPIVPEQ QKQPVRSYDA EIFSWHDQKL LKASAFLPNM ESPFVPNSFT GKRKSPVGNS  300
AIVQPHVGSR AVHEYQFLPE QPSDTYERAT RSHYYDTPVE VSNARIPSIT SGSQLLHGSE  360
EAAPSYAFQG HTSGSSLLPP SSRPQVFPAA PTDYEMTQSN SNLSSVPVEG QFDISQVAAF  420
ENPPVSSEII AYHDEDTSRV ERKRKHSEEA KIAKEVEAHE RRIRKELEKQ DMLNKKREEQ  480
RRKEMERLDR ERRKEEERLL RERQREEERF QREQRREHER MEKFLQKQSR RAEKQRQKEE  540
LRKEKEAARQ KAANERATAR RIAREYMELV EDERLESMEL AAQNKGLPSM LYLDSDTLQQ  600
LDSFRGMLSQ FPPTTVRMKL PFSIKPWTGS EDNVGNLLMY SYNFISGDIL LTGLQVWKFL  660
ITFTDVLGLC PVTLDEFVQS LHDYDSRLLG ELHIALLRSI IKDIEDVART PSIALGVNPG  720
GGHPQIVEGA YAWGFNIRSW QRHLNLLTWP EILRQFALSA GFGPQLKKRT VEDSYYRNDN  780
EGHDGENVIL TIRNGTAAVN AAAKMKERGY TNRRRSRHRL TPGTVKFAAF HVLSLEGSNG  840
LTILEVAEKI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS  900
EAVLSAARER IRAFQNVLSD SEAEKEVDEA ERDDDSDCDD GDDDPDGDDV NTEVEDDKDP  960
LLAVKSQDEV PSTTTVIGIK ANLDGVGNAL NSSSSFTKSA KGAPLPSLGR SNAADTSNDL  1020
PLGVSSANHE VVPDDSENTQ IDESNQAEPW VRALAEGDYC DLSVEERLNA LVALVGVATE  1080
GNSIRAVLEE RLELANALKK QMWAEAQLDK RRFKEEFTSR VQYNSDMGLK PDIYQENNVT  1140
EITSTPACDA YRENDEHVGT INNCEMLDQH NQGNAGSLPY ERNGVCQEIL ATPDTSYVQQ  1200
YAYADKRRSQ LKSYIGHRAE QLYVYRSLPL GQDRRRNRYW QFTTSASPND PGSGRIFFES  1260
KDGYWRVIDS EELPAEVSNE LTLTTHG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159357
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159357_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675221.10.0homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_020406107.10.0homeobox-DDT domain protein RLT2 isoform X3
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A1D6NG830.0A0A1D6NG83_MAIZE; Homeobox-DDT domain protein RLT1
STRINGGRMZM2G159357_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.20.0Homeodomain-like transcriptional regulator