PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159475_P04
Common NameGRAS50
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 197aa    MW: 22947.2 Da    PI: 6.1229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159475_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.72.3e-522188187373
               GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        e++++e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++  + + +++ F++rf eal +ysalfd+l+a+ pr+
  GRMZM2G159475_P04   2 ESIRVEDLNLDPEEVLIVNCLYQFKNLMDESVVIESPRDIVLNNIRNMRPHTFIHAIVNGSFSAPFFVTRFREALFFYSALFDALDATTPRD 93 
                        7899**************************************************************************************** PP

               GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                        s++r+ +E+ l+gr++ nv+aceg++r+er et+++W+ r ++aG+k+ pl+ ++++ ++  ++ ++ + + ++ ++ +l++gWk+r L++v
  GRMZM2G159475_P04  94 SNQRMLIEENLFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQQPLNPDVVQVVRNKVKDCYHKDFVIDVDHRWLLQGWKGRILYAV 185
                        *******************************************************************889********************** PP

               GRAS 371 SaW 373
                        S W
  GRMZM2G159475_P04 186 STW 188
                        *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.9531169IPR005202Transcription factor GRAS
PfamPF035148.0E-502188IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MESIRVEDLN LDPEEVLIVN CLYQFKNLMD ESVVIESPRD IVLNNIRNMR PHTFIHAIVN  60
GSFSAPFFVT RFREALFFYS ALFDALDATT PRDSNQRMLI EENLFGRAAL NVIACEGTDR  120
VERPETYKQW QVRNQRAGLK QQPLNPDVVQ VVRNKVKDCY HKDFVIDVDH RWLLQGWKGR  180
ILYAVSTWVA NDAPSYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-168153234381Protein SHORT-ROOT
5b3h_E3e-168153234381Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.43910.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159475
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159475_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0356410.0BT035641.1 Zea mays full-length cDNA clone ZM_BFb0073P23 mRNA, complete cds.
GenBankBT0366170.0BT036617.1 Zea mays full-length cDNA clone ZM_BFb0126F15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405892.11e-142scarecrow-like protein 34
SwissprotP0C8842e-75SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A3L6FMI61e-141A0A3L6FMI6_MAIZE; Scarecrow-like protein 9
TrEMBLB4FEV31e-145B4FEV3_MAIZE; Uncharacterized protein
STRINGGRMZM2G159475_P011e-141(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.17e-78GRAS family protein