PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159592_P01
Common NameLOC103635292, ZEAMMB73_757608
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family RAV
Protein Properties Length: 375aa    MW: 40278.5 Da    PI: 10.4771
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159592_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1276124155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  GRMZM2G159592_P01  76 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 124
                        89****9888.8*********......44**********99*************98 PP
2B3924.3e-29206299190
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+ tpsdv+k++rlv+pk++ae+h       gg  +    l++ed  g+ W+++++y+++s++yvltkGW++Fvk++gL +gD v F+++
  GRMZM2G159592_P01 206 FDKTVTPSDVGKLNRLVIPKQHAERHfplrrvqGGRAP---ILSFEDAAGKAWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRS 294
                        89***************************988655544...6************************************************76 PP

                        SSSEE CS
                 B3  86 grsef 90 
                           ++
  GRMZM2G159592_P01 295 AAAGR 299
                        55444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-1676132IPR016177DNA-binding domain
PfamPF008472.5E-876124IPR001471AP2/ERF domain
CDDcd000187.46E-2276132No hitNo description
Gene3DG3DSA:3.30.730.101.3E-1977132IPR001471AP2/ERF domain
PROSITE profilePS5103219.86277132IPR001471AP2/ERF domain
SMARTSM003803.2E-2677138IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.9E-39199310IPR015300DNA-binding pseudobarrel domain
CDDcd100178.13E-28204299No hitNo description
SuperFamilySSF1019361.16E-28204306IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-19206308IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239206307IPR003340B3 DNA binding domain
PfamPF023627.3E-26206302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDSTSCLLDD ASSGASTGKN KPAPVPAPAA VTGKPLQRVG SSGASAVMDA AEPGAEADSD  60
GARRAPGGVG GKLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGEAE AARAYDVAAQ  120
RFRGRDAVTN FRPLAESDLD PDAAAELRFL ASRSKAEVVD MLRKHTYGEE LAQNRRAFAA  180
AAASLASPQL PPAKNTSPAA AREHLFDKTV TPSDVGKLNR LVIPKQHAER HFPLRRVQGG  240
RAPILSFEDA AGKAWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG FYRSAAAGRQ  300
LFIDCKLRPK AVRLFGVDLL TEPPRSAAAV AQPEPEQEEI AVSKNKRARD AIAASATPVH  360
IAFKKQRVDV ALTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-462003102115B3 domain-containing transcription factor NGA1
5os9_B1e-462003102115B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159592
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159592_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419620.0BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656006.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-161Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLK7UX200.0K7UX20_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G159592_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-97RAV family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]