PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G160224_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 48aa    MW: 5705.67 Da    PI: 11.1588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G160224_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.1e-122474285
                       TS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3 42 sgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85
                       +grsW+v l+   +++       ++ GW +F+ +n+L++gD++ F+++
  GRMZM2G160224_P01  2 RGRSWTVSLKR--GKRLlgdrSAFKYGWHKFCVDNNLEVGDVCFFRVI 47
                       69*******54..333233448899********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-14147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.38148IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-12247IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-9247IPR003340B3 DNA binding domain
CDDcd100172.88E-8345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 48 aa     Download sequence    Send to blast
MRGRSWTVSL KRGKRLLGDR SAFKYGWHKF CVDNNLEVGD VCFFRVIR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G160224
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G160224_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.12e-21B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.12e-21B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q262e-17Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0A9SID02e-20A0A0A9SID0_ARUDO; Uncharacterized protein
TrEMBLA0A1E5W8P62e-20A0A1E5W8P6_9POAL; B3 domain-containing protein
STRINGGRMZM2G160224_P011e-27(Zea mays)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]