PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G160902_P01

Common Name

bZIP48, LOC107275238, Zm.96666

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 152aa MW: 16711.8 Da PI: 9.268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G160902_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.9	1.2e-14	24	83	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++re+r+ +NRe+ArrsR+RK++ ++eL+++++ L+aeN + + ++ + a++++e+ GRMZM2G160902_P01 24 RRREKRRLSNRESARRSRLRKQQHLDELAQEAALLQAENARVAARAADVASQNARVEQEN 83 79********************************************99999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-10	20	80	No hit	No description
SMART	SM00338	1.8E-14	21	85	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-11	23	83	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	23	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-9	25	79	No hit	No description
CDD	cd14702	2.13E-13	26	62	No hit	No description
PROSITE pattern	PS00036	0	28	43	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSSSSLSPAG RTSGSDGDSA ADTRRREKRR LSNRESARRS RLRKQQHLDE LAQEAALLQA 60 ENARVAARAA DVASQNARVE QENAVLRARA AELGARLRSV NEVLRVVEEF SGVAMDIQEE 120 VPPADDPLLR PWQLPCYPAA AMPIGAPHML RY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	30	RRREKRRL
2	37	43	RRSRLRK
3	37	44	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.96666	0.0	ear\| embryo\| root\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G160902

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G160902_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055634	0.0	BT055634.2 Zea mays full-length cDNA clone ZM_BFc0087G10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001307445.1	1e-104	uncharacterized protein LOC107275238
Swissprot	P24068	7e-87	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A0A060D700	1e-102	A0A060D700_MAIZE; BZIP transcription factor (Fragment)
TrEMBL	A0A3L6FBI6	1e-102	A0A3L6FBI6_MAIZE; Ocs element-binding factor 1
STRING	GRMZM2G160902_P01	1e-103	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100
Representative plant	OGRP551	16	78

Link Out ? help Back to Top
Phytozome	GRMZM2G160902_P01
Entrez Gene	107275238

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]