PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G161411_P01
Common NameZ174J15.9
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 140aa    MW: 15122.5 Da    PI: 6.1133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G161411_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.79.8e-2348105258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                        +Dgy+W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp++ + ++Y g H+h
  GRMZM2G161411_P01  48 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPRDPSAaLRVVYDGAHQH 105
                        7******************************************985278********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.76542108IPR003657WRKY domain
SuperFamilySSF1182901.96E-2045106IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-2345106IPR003657WRKY domain
SMARTSM007745.9E-2447107IPR003657WRKY domain
PfamPF031061.3E-2048105IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDDSSSQPAT IVSGGEERNQ RREEDDDEET AAAEAEAGNG SQLMVVPEDG YEWKKYGQKF  60
IKNIQKIRSY FRCRHRLCGA KKKVEWHPRD PSAALRVVYD GAHQHGAAPP AAPEQGGGGG  120
ASNRYELGAQ YFGAGPAGSG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G161411
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G161411_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706334e-90EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644632.14e-85probable WRKY transcription factor 2
TrEMBLQ6JAE31e-98Q6JAE3_MAIZE; Putative DNA-binding protein
STRINGGRMZM2G161411_P012e-99(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.19e-12WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  2. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]