PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G161512_P05
Common Namecl6449_1b
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 315aa    MW: 33506.3 Da    PI: 6.0289
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G161512_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-101647132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       +g+WT+ Ed+ll d v+++G g+W+++ r++ 
  GRMZM2G161512_P05 16 KGPWTQAEDKLLRDHVRRHGEGNWNAVRREIK 47
                       79**************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7751159IPR017930Myb domain
SuperFamilySSF466891.05E-71345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-101345IPR009057Homeodomain-like
SMARTSM007179.6E-41557IPR001005SANT/Myb domain
PfamPF002493.5E-81647IPR001005SANT/Myb domain
CDDcd001671.48E-61846No hitNo description
PROSITE patternPS0017503140IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MARSGGGMEG SGGLKKGPWT QAEDKLLRDH VRRHGEGNWN AVRREIKLLR AQNVNPFADA  60
DADAAHANAS AGLPAPPLLY DVGNPFALLS SIPSLSQTAS HSHSPLINQN YPLLNQMQVF  120
HHLGGSQQPS FHQDGSAAAF GDIVSSRLPP LPTARTQAEL HSNQFDTSIS GGLVDQSMLI  180
GDEHLLRPNP SMVKVSSMPA LSYREPDGSR MLPAHGAGSD GDVSSLGQCP PGQDLHRGAT  240
WDFTFAAVKP AKRRTASEVG FSDMFAVAPP GDWFGGGSTA PSPGPSSAVT DEEFNLEMQQ  300
FMSMLPLSDE HGWNA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.123700.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G161512
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G161512_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0422910.0BT042291.1 Zea mays full-length cDNA clone ZM_BFb0192N02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681371.10.0uncharacterized protein LOC100272446 isoform X1
TrEMBLA0A1D6GSP40.0A0A1D6GSP4_MAIZE; Myb domain protein 101
TrEMBLA0A3L6EMQ90.0A0A3L6EMQ9_MAIZE; Transcription factor GAMYB
STRINGGRMZM2G161512_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-08myb domain protein 101