PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G161666_P01
Common NameLOC103629660
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26141.4 Da    PI: 5.078
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G161666_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.22.8e-251059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       r+en   rqvtfskRr+g+lKKA EL vLC+++v v++fs++gkl+eyss
  GRMZM2G161666_P01 10 RVENRVSRQVTFSKRRKGLLKKADELAVLCGVDVGVVVFSERGKLFEYSS 59
                       79**********************************************96 PP
2K-box55.23e-1988169887
              K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                        + +++++++++  e+++L++e e+L+ ++  + GedL+s  s+ eL +Leq+Le+++ k+R++K+ell++ +eelq k +e+
  GRMZM2G161666_P01  88 DhQSDHQQQQMAAEISQLRSECEQLEASLNAYTGEDLSSVtSVVELLELEQRLESAIGKVRARKDELLVNLTEELQVKTEEH 169
                        34789999******************************984689**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-28279IPR002100Transcription factor, MADS-box
CDDcd002652.98E-37271No hitNo description
PRINTSPR004046.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.8E-1691168IPR002487Transcription factor, K-box
PROSITE profilePS5129711.4395187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKVEMRR VENRVSRQVT FSKRRKGLLK KADELAVLCG VDVGVVVFSE RGKLFEYSSP  60
TSLVDLIRRY EAATSTRLLH QDARCCTDHQ SDHQQQQMAA EISQLRSECE QLEASLNAYT  120
GEDLSSVTSV VELLELEQRL ESAIGKVRAR KDELLVNLTE ELQVKTEEHG RHDGPPAAAG  180
VEATVAEPPL PQSPSFAYLL ALEEKSAAST MLRLWPPTDE DADGGGSSSP RDLHLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-14159159MEF2 CHIMERA
6byy_B1e-14159159MEF2 CHIMERA
6byy_C1e-14159159MEF2 CHIMERA
6byy_D1e-14159159MEF2 CHIMERA
6bz1_A2e-14159159MEF2 CHIMERA
6bz1_B2e-14159159MEF2 CHIMERA
6bz1_C2e-14159159MEF2 CHIMERA
6bz1_D2e-14159159MEF2 CHIMERA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G161666
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G161666_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681771e-118BT068177.1 Zea mays full-length cDNA clone ZM_BFb0074C22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648980.11e-173MADS-box transcription factor 30 isoform X2
SwissprotQ655V48e-48MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A3L6EAI11e-148A0A3L6EAI1_MAIZE; BTB/POZ and MATH domain-containing protein 1
STRINGGRMZM2G161666_P011e-172(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-26MIKC_MADS family protein