PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G162840_P01
Common NameLOC100383806, ZEAMMB73_239235
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 340aa    MW: 36758.8 Da    PI: 4.9809
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G162840_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.82.3e-2629128186
           trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                        rWt+qe+l+Lie++r +e r +rg+                 + +p+W++v++++r++g+er+p+qC+++w+nl+++ykk+ke+e+     +
  GRMZM2G162840_P01  29 RWTRQEILVLIEGKRMVEGRGGRGArgraaaaaasgeasavaALEPKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKVKEWERAA---A 117
                        8*********************9877778888899999999889******************************************86...3 PP

           trihelix  76 sstcpyfdqle 86 
                         s+ p f  ++
  GRMZM2G162840_P01 118 ASREPSFWAMR 128
                        33557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-1029127No hitNo description
PROSITE profilePS500906.31929103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-629102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSTAGDPAVA AAAAAAAATP SGRAPRLPRW TRQEILVLIE GKRMVEGRGG RGARGRAAAA  60
AASGEASAVA ALEPKWAAVA EYCRRHGLER GPVQCRKRWS NLAGDYKKVK EWERAAAASR  120
EPSFWAMRND ARRERRLPGF FDREVYDILE GRGRAIVDGR SARNAAAEQP APVRVDEDKE  180
AEVPEAVFDS GRPATEEALF SEDEEEEEED APPVAPPPPP PPVIAVPVSE KPEASRQQQS  240
AEQGTSKDTQ PEQSSERDAP AQQGGQKRPR TVEGAGEGTA DLESKLVEIL DRNSRLVAAQ  300
LEAQNQNCEL DREQRKDQAN SLVVVLGRLA DALGRIADKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.542450.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G162840
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G162840_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683320.0BT068332.1 Zea mays full-length cDNA clone ZM_BFb0102G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169909.20.0uncharacterized protein LOC100383806
TrEMBLC0PJ630.0C0PJ63_MAIZE; Uncharacterized protein
STRINGGRMZM2G162840_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-47Trihelix family protein