PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163054_P03
Common NameZm.120034
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 192aa    MW: 21743.9 Da    PI: 9.5437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163054_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.81.4e-10143165123
                        ---SS-EEEEEEE--TT-SS-EE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                        ldDg++WrKYG+K vk+s++pr 
  GRMZM2G163054_P03 143 LDDGFKWRKYGKKAVKSSPNPRY 165
                        59*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-10131167IPR003657WRKY domain
SuperFamilySSF1182901.44E-8135165IPR003657WRKY domain
PROSITE profilePS5081113.551138192IPR003657WRKY domain
SMARTSM007740.0011143187IPR003657WRKY domain
PfamPF031062.4E-6144166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004006anatomymesophyll cell
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAASLGLNPE AVFTSYTSSP PFMSDYVAAS FLPPAVVDST DFSAELDDLH HHLDYSSPAP  60
TLAGARSDRS EKQMMYVLPM HSKFYQINCY GVASYYWLLF LLLTVVYCYG DFISSISRWC  120
EGGGGEKRLG RIGFRTRSEV EILDDGFKWR KYGKKAVKSS PNPRYTHMFT WNIVKINSQN  180
MKATSRKATK KK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163054
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163054_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852661e-124BT085266.2 Zea mays full-length cDNA clone ZM_BFb0348H08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394762.11e-119uncharacterized protein LOC107546771 isoform X1
TrEMBLC4J6I02e-75C4J6I0_MAIZE; Putative WRKY transcription factor 50
STRINGGRMZM2G163054_P044e-76(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-14WRKY DNA-binding protein 50