PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163157_P01
Common NameZEAMMB73_648796, Zm.768
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 315aa    MW: 34673 Da    PI: 10.3958
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163157_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.85.9e-1318104186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       +++   r+ +qCk++ + l+k+yk+++++ +       s ++++ ql
  GRMZM2G163157_P01  18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARGRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPWSFYGQL 103
                        7*******************************************777778********************9998775......357787777 PP

           trihelix  86 e 86 
                        +
  GRMZM2G163157_P01 104 D 104
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2416104No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004006anatomymesophyll cell
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG  60
ASARGRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWSFY GQLDILVGPT LNGTKKPSPP  120
RAALPVFRRR QTPPRSPSPQ SPPPLPVALP LHNYRRGSDL PSANFIHKAA AAAAAAAAAA  180
ESDSEDGYNN NEYDDDEGSQ QSPSRSVSSR SGGAPAVGTK RKRRSGSGGF GELARAIETF  240
ADMYERMEAA KQRHAEEMER QRIKFLKDLE LKRMRSFVDM QLQLSRAKHA RKGDASSEML  300
MSLAALPFLS SSAYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.7680.0aerial organ| cell lignification| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163157
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163157_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9617750.0EU961775.1 Zea mays clone 238196 6b-interacting protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149030.20.06b-interacting protein 1
SwissprotQ9LJG84e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3L6DTN00.0A0A3L6DTN0_MAIZE; Trihelix transcription factor ASIL2
TrEMBLK7VKJ40.0K7VKJ4_MAIZE; 6b-interacting protein 1
STRINGGRMZM2G163157_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-29sequence-specific DNA binding transcription factors