PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163200_P04
Common NameGATA24, LOC107228387, Zm.87116
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 422aa    MW: 43432.3 Da    PI: 5.7527
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163200_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.2e-18339372134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  GRMZM2G163200_P04 339 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 372
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-14331394No hitNo description
SMARTSM004013.5E-16333383IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.055333369IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14337370IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.95E-14338395No hitNo description
PROSITE patternPS003440339364IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15339372IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAGGGFVEDM MREQSLLEAT CGDLFDHIDD LLDFPNEDSA AAVLLLDAPA PGSPLSARII  60
DVGRAGNALA PPAAPAQHDA SASAFFAAAG NDVFDTKDVV GAHIGSCDDI DMDMAQLEWL  120
SGLFDDASIP HEPVFPGATA GGAAPIMKSS ALAAGALLPQ DKMEDALLFR SSSPISVLEH  180
GSGGSGSASA TGSASSSSSS ASSSSESFSG SGSGSGGGHV WSAPVSPRPA PPPALVIPAR  240
ARSKRSRSSA FTGAAARAGA ETPTILVPTP MYSSGSAHSD PESIAESSPH PAPPMKKKKK  300
AKKPVVPAPA ASSDDNDGDA DYEEGGEQTE PQGGAVRRCT HCQIEKTPQW RAGPLGPKTL  360
CNACGVRYKS GRLFPEYRPA ASPTFVPSIH SNSHKRVVEM RQKAVRSGDP SCDLLHFIRR  420
RD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.978440.0cell culture| endosperm| glume| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163200
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163200_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541210.0BT054121.2 Zea mays full-length cDNA clone ZM_BFb0117M13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307377.10.0uncharacterized protein LOC107228387
RefseqXP_020393148.10.0uncharacterized protein LOC107228387 isoform X1
RefseqXP_020393149.10.0uncharacterized protein LOC107228387 isoform X1
RefseqXP_020393150.10.0uncharacterized protein LOC107228387 isoform X1
TrEMBLA0A060D4170.0A0A060D417_MAIZE; C2C2-GATA transcription factor (Fragment)
STRINGGRMZM2G163200_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-37GATA family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]