PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165188_P01
Common NameZEAMMB73_537022
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 241aa    MW: 26653.1 Da    PI: 6.2619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165188_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-111832231055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +rRR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  GRMZM2G165188_P01 183 KRRRERINEKLRTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 223
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-15171236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14172231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-11179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.48E-12182227No hitNo description
PfamPF000107.8E-9183223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEANCASIWS EESETIAHLQ SMFWSGSNAD ACLSSPNSSA SSCVEPSTSP TALFLPLAEN  60
QRCDKEQCQN TGAVRCFGHK SQVLAPITNE VTANKRVCLM DENRKSTDAK RPCTVPPWVS  120
RKNSIAPADE INTTEPVNKS CSWCCSSEDD SAGACEEPIV LKQSTSSRGP SRSSKDSQSL  180
YAKRRRERIN EKLRTLQQLI PNGTKVDMST MLEEAVQYVK FLQLQIKLLL ACKCEQEVHL  240
E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.990081e-136endosperm| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165188
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165188_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658901e-134BT065890.2 Zea mays full-length cDNA clone ZM_BFc0182I15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677952.11e-168transcription factor bHLH139
TrEMBLA0A3L6F9E61e-154A0A3L6F9E6_MAIZE; Transcription factor bHLH84
STRINGGRMZM2G165188_P011e-177(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-24bHLH family protein