PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165355_P03
Common NameLOC100283296, ZEAMMB73_911935
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 212aa    MW: 22821.1 Da    PI: 4.5964
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165355_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000196688123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C + F ++  L  H++ H
  GRMZM2G165355_P03 66 FTCNYCQRKFFSSQALGGHQNAH 88
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.99E-76393No hitNo description
PROSITE profilePS5015711.3236693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNDKEMMCQE QCDELSETEI SSQEASNSSG PVSLDLSLSV TDNSNGNNSN SGGAQADAAR  60
EPSRVFTCNY CQRKFFSSQA LGGHQNAHRR ERTLARRALR LDAAGPYYGY GYGYYADVAS  120
LPLYGSCLYP IGIQAHASAA ALPEHEDARA GADELRRPAR GLLSPMPFLV ADDEEMLFGW  180
PGSFRPDAAA PADSAGGVAV HAREEPDLTL RL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.843790.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165355
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165355_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0637530.0BT063753.1 Zea mays full-length cDNA clone ZM_BFc0103M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149670.11e-155zinc finger protein 7
RefseqNP_001152081.21e-155zinc finger protein 7
RefseqXP_020399258.11e-155zinc finger protein 7 isoform X1
RefseqXP_020399259.11e-155zinc finger protein 7 isoform X1
RefseqXP_020399260.11e-155zinc finger protein 7 isoform X1
SwissprotQ392633e-28ZFP4_ARATH; Zinc finger protein 4
TrEMBLC0P6341e-154C0P634_MAIZE; Zinc finger protein 1
STRINGGRMZM2G165355_P011e-155(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-14zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]