PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165488_P04
Common NameLOC100193094
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 202aa    MW: 21340.3 Da    PI: 9.9856
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165488_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA46.99.2e-15167201136
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                        d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rk
  GRMZM2G165488_P04 167 DAPVYVNPKQYEGILRRRRARAKAESENRL-TKGRK 201
                        68****************************.99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115219.639166202IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-11169201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MMSFKGHEGF GQVSGAGMSQ ASHGAAPAGA PLPWWAGAQL LSGEPAPLSP EEAPRDTQFQ  60
VVPGASQGTP DPAPPKGGTP KVLKFSVFQG NLESGGKGEK TPKNSTAVVL QSPFAEYNGR  120
FEIGLGQSML VPSSYSCADQ CYGMLTTYGM RSMSGGRMLL PLIAPADAPV YVNPKQYEGI  180
LRRRRARAKA ESENRLTKGR KV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.284840.0meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165488
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165488_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352570.0BT035257.1 Zea mays full-length cDNA clone ZM_BFb0051L17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345563.11e-143uncharacterized protein LOC100193094
RefseqXP_008681101.11e-143uncharacterized LOC100193094 isoform X1
RefseqXP_008681103.11e-143uncharacterized LOC100193094 isoform X1
RefseqXP_008681104.11e-143uncharacterized LOC100193094 isoform X1
TrEMBLB4FDR91e-145B4FDR9_MAIZE; Uncharacterized protein
STRINGGRMZM2G165488_P021e-143(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-09nuclear factor Y, subunit A10