PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G166230_P02

Common Name

BBR2

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

BBR-BPC

Protein Properties

Length: 184aa MW: 20263.6 Da PI: 11.0818

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G166230_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	278.6	2.9e-85	11	184	126	301
GAGA_bind 126 lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtG 217 +r ++++ ++ + a+++ ++k+ +kkr + ++pk+ k +k+kk +++ ++ + +++ +r++ +kk++++v+ng++lD +++P+PvCsCtG GRMZM2G166230_P02 11 TRSNHNIIVTML-AAHPDPDTKPPVKKRWQVRQPKSLKPRKPKK-AAVPPENGALNEHAPRRRGPKKTVGMVINGIELDLANIPTPVCSCTG 100 445555544444.456667777888889**************.667778888888889**************************** PP GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 a++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir GRMZM2G166230_P02 101 APQQCYRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKFVTIR 184 *********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	9.4E-97	1	184	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-88	10	184	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MDITMPHTSS TRSNHNIIVT MLAAHPDPDT KPPVKKRWQV RQPKSLKPRK PKKAAVPPEN 60 GALNEHAPRR RGPKKTVGMV INGIELDLAN IPTPVCSCTG APQQCYRWGA GGWQSACCTT 120 SISTYPLPMS TKRRGARIAG RKMSQGAFKK VLEKLAGEGY NLANPIDLKT FWAKHGTNKF 180 VTIR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.118429	0.0	embryo\| meristem\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G166230

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G166230_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064015	0.0	BT064015.1 Zea mays full-length cDNA clone ZM_BFc0131I22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152265.1	1e-108	uncharacterized protein LOC100285904
Swissprot	P0DH88	5e-88	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	5e-88	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A3L6FZ06	1e-134	A0A3L6FZ06_MAIZE; Barley B recombinant-like protein B
TrEMBL	B7ZY75	1e-134	B7ZY75_MAIZE; BBR-BPC transcription factor
STRING	GRMZM2G166230_P02	1e-135	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	5e-65	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	GRMZM2G166230_P02

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]