PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G166642_P02
Common NameZEAMMB73_923404, Zm.21095
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 176aa    MW: 18426.5 Da    PI: 8.4974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G166642_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.9e-1184112330
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.a 30 
                        ++h+e+ErrRR+riN  +++Lr+++P  +
  GRMZM2G166642_P02  84 KSHSEAERRRRERINAHLATLRTMVPCsD 112
                        58************************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-879112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.80481148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-884112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-985112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDDIGSVPFA DAGLLDGFYG GSHGHGGDYG LLASQLGAGA GASSTSPAIL DGSVPLVDAA  60
ASAEEATRRK GDHLQDDKAA MALKSHSEAE RRRRERINAH LATLRTMVPC SDKAPTRWRR  120
GVGCTSAPGS GYRSTAGEDD AAWHCSKLGH RLSVETGPKP SRGKAQQYLA LARPNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.210950.0glume
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G166642
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G166642_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0844480.0BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457128.12e-32transcription factor bHLH30
TrEMBLA0A3L6FN233e-71A0A3L6FN23_MAIZE; Transcription factor bHLH30
STRINGGRMZM2G016039_P013e-73(Zea mays)
STRINGGRMZM2G166642_P013e-73(Zea mays)