PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G167492_P01
Common NameZEAMMB73_031911, Zm.147281
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 518aa    MW: 57331.9 Da    PI: 5.6171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G167492_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.4e-5091361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGf FhP+d elv++yLk+k+ g+k+e  + i+evdiyk+ePwdLp+  ++  e+++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd+
  GRMZM2G167492_P01   9 LPPGFGFHPSDTELVSHYLKRKILGQKIEY-DPIPEVDIYKHEPWDLPAkcNLPIEDNKWHFFASRDRKYPTGSRSNRATLAGYWKSTGKDR 99 
                        79****************************.99***************6244555999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  k+++ g+kktLvf++gr p+g++t+W+mhey +
  GRMZM2G167492_P01 100 AIKL-KKRTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136
                        ****.9999***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-574159IPR003441NAC domain
PROSITE profilePS5100555.129159IPR003441NAC domain
PfamPF023651.1E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEVLRDMHLP PGFGFHPSDT ELVSHYLKRK ILGQKIEYDP IPEVDIYKHE PWDLPAKCNL  60
PIEDNKWHFF ASRDRKYPTG SRSNRATLAG YWKSTGKDRA IKLKKRTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDENE CKVSPDMKDA FVLCRVTKRS DWELDNEVGN RYPHLEQLDA  180
AAASVASTVK PEDAVATVIC PEESNRAATP VGSDELSNDV GQEPITPDSS PPNGGKELEV  240
WLEELLDPSP SFNLVADTRS ADVSLTDQYA ESSNLQNPGS VSRNIGPGHA SPIQDGTDAT  300
DYLLTDDLPE DLYSMLYPGT DQFYDSMFLE QAGQEGIAFP TNQAYYMMGM ESYALPTNLN  360
GTLNAELQSD QENNTTNLAN GNTDTGVTIQ SRRATTSPAN ISLAAGKIKM QVGINRMVTS  420
SSVSINQTMR FTDNSGRRLD LKTDDVEHQK KTTNSAISAK QSRAANPEGH SSQGYLKGFK  480
NTFRCSSAGF KAYISFAFFV VGVAAAAVLH HHRSCANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-45616312173Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1607760.0meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G167492
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G167492_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554470.0EU955447.1 Zea mays clone 1532551 TIP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147448.10.0uncharacterized protein LOC100281057
SwissprotQ7GCL71e-150NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLB6SRT20.0B6SRT2_MAIZE; TIP
STRINGGRMZM2G167492_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Representative plantOGRP1283345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-58NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]