PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G168002_P05
Common NameZEAMMB73_618510, Zm.99624
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 159aa    MW: 17259.3 Da    PI: 8.5351
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G168002_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.77.4e-302376255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       +rlrWt +LH+rFv av+qLGG++kAtPk++l++m v+gLtl+h+k HLQkYRl
  GRMZM2G168002_P05 23 ARLRWTRQLHDRFVLAVAQLGGADKATPKSVLRAMAVPGLTLYHLKRHLQKYRL 76
                       7****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-292077IPR009057Homeodomain-like
SuperFamilySSF466892.33E-142277IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-212376IPR006447Myb domain, plants
PfamPF002497.4E-62475IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASSLGVGGQ QQGHGHGHGE ARARLRWTRQ LHDRFVLAVA QLGGADKATP KSVLRAMAVP  60
GLTLYHLKRH LQKYRLVAVS RGVASPLGDS GDGTDERSSS SSENQPADEC DDGTVAEPHG  120
DSSRSVARMQ RKLQEQIEVN ETIESGRSIT IVPTLWLWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-182275154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182275154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182275154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182275154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.998250.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G168002
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G168002_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0646040.0BT064604.1 Zea mays full-length cDNA clone ZM_BFc0189E19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407237.17e-83uncharacterized LOC100382520 isoform X1
TrEMBLA0A3L6FAQ41e-112A0A3L6FAQ4_MAIZE; Myb-related protein 2
STRINGSb07g021290.11e-60(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-27G2-like family protein