PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169382_P01
Common NameLOC100193143
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 227aa    MW: 24490.4 Da    PI: 7.3445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169382_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1957107256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  GRMZM2G169382_P01  57 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 107
                        6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-2257115IPR016177DNA-binding domain
SMARTSM003804.6E-3857120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3257115IPR001471AP2/ERF domain
PROSITE profilePS5103224.48757114IPR001471AP2/ERF domain
CDDcd000181.42E-1657116No hitNo description
PRINTSPR003674.5E-115869IPR001471AP2/ERF domain
PfamPF008471.3E-1258106IPR001471AP2/ERF domain
PRINTSPR003674.5E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MCGGAIIFDY IPARRRVSAA DFWPDSEADA EDSDSHAPDP ERVPRPRGKA KRGRKNQYRG  60
IRQRPWGKWA AEIRDPVKGV RVWLGTYPTA EAAARAYDRA ARRIRGAKAK VNFPNDASSS  120
SVTAPTAASG VAAQAPAVFL PAPKVEARAQ VSDEVKELSE ELMAYENYMN FLGVPYMEGG  180
NAAVSATTAA AAAAAVPEEA QVPAPAPAGL WSFEDYYYPP SLSLFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2257120569ATERF1
3gcc_A3e-2257120569ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.812980.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169382
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169382_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353270.0BT035327.1 Zea mays full-length cDNA clone ZM_BFb0055H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.11e-162uncharacterized protein LOC100193143
TrEMBLB4FDY91e-160B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2
TrEMBLK4JRM41e-160K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G169382_P011e-161(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-22ERF family protein