PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169654_P01
Common NameZm.84705
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family RAV
Protein Properties Length: 389aa    MW: 40493.6 Da    PI: 9.9227
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169654_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.4e-1276124155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  GRMZM2G169654_P01  76 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 124
                        78****9888.8*********......44**********99*************98 PP
2B3101.16.3e-32213311191
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l led  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++
  GRMZM2G169654_P01 213 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRS 304
                        89*******************************5556799**************************************************77 PP

                        SS.SEE. CS
                 B3  86 gr.sefe 91 
                            +++
  GRMZM2G169654_P01 305 AAgADTK 311
                        5545554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-1676132IPR016177DNA-binding domain
PfamPF008479.6E-876124IPR001471AP2/ERF domain
CDDcd000181.18E-2176132No hitNo description
Gene3DG3DSA:3.30.730.103.8E-1977132IPR001471AP2/ERF domain
SMARTSM003801.4E-2477138IPR001471AP2/ERF domain
PROSITE profilePS5103219.65177132IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.9E-40208322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-31211314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-30211314No hitNo description
SMARTSM010198.4E-24213319IPR003340B3 DNA binding domain
PfamPF023628.0E-29213314IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099213318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDSASSLVDD TSSGGGGGAS TDKLRALAVF AAASGTPLER MGSGASAVVD AAEPGAEADS  60
GSGAAAVSVG GKLPSSRYKG VVPQPNGRWG AQIYERHQRV WLGTFAGEAD AARAYDVAAQ  120
RFRGRDAVTN FRPLADADPD AAAELRFLAS RSKAEVVDML RKHTYFDELA QNKRAFAAAS  180
ASAATASSLA NNPSSYASLS PATATAAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP  240
LQLPSAGGES KGVLLNLEDA AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLQAGDVVG  300
FYRSAAGADT KLFIDCKLRP NSVVVASTAG PSPPAPVAKA VRLFGVDLLT APATAAAPAE  360
AVAGCKRARD LGSPPQAAFK KQLVELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5121033211128DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847050.0cell culture| ear| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169654
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169654_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278700.0KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151105.20.0DNA-binding protein RAV1
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A1D6NEV80.0A0A1D6NEV8_MAIZE; DNA-binding protein RAV1
STRINGGRMZM2G169654_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-97related to ABI3/VP1 2