PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169884_P01
Common NameCA3P3, Zm.162463
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 166aa    MW: 18491.4 Da    PI: 7.6719
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169884_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.42.6e-4535128295
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        r+++++lPianv+rimk +lP +akisk+aket+qec +ef++fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre+
  GRMZM2G169884_P01  35 RHDNNLLPIANVGRIMKDALPPQAKISKHAKETIQECTTEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADAMRRYLQRYRET 126
                        78899**************************************************************************************9 PP

              NF-YB  94 eg 95 
                        e+
  GRMZM2G169884_P01 127 EE 128
                        85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.6E-4230129IPR009072Histone-fold
SuperFamilySSF471131.41E-3237133IPR009072Histone-fold
PfamPF008082.1E-2441104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.6E-146886No hitNo description
PRINTSPR006153.6E-1487105No hitNo description
PRINTSPR006153.6E-14106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSHTSNFTGF SQLEHPQPQR NSRASSSTTH DANVRHDNNL LPIANVGRIM KDALPPQAKI  60
SKHAKETIQE CTTEFVGFVT GEASERCRRE RRKTINGDDI CHAMRSLGLD HYADAMRRYL  120
QRYRETEELA AALNSGGGGH DGNAIQIDVR DELSIFKGSN QQGGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-3834125192Transcription factor HapC (Eurofung)
4g92_B6e-3834125192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169884
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169884_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9742440.0JN974244.1 Zea mays HAP3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266909.11e-122uncharacterized protein LOC101027253
SwissprotO822482e-40NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A3L6FE041e-121A0A3L6FE04_MAIZE; Nuclear transcription factor Y subunit B-8
TrEMBLH9B3R61e-121H9B3R6_MAIZE; CCAAT-HAP3 transcription factor
STRINGGRMZM2G169884_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-43nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]