PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169947_P01
Common NamebHLH83
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 204aa    MW: 21858.5 Da    PI: 10.2174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169947_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.6e-112776554
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                        +e+ErrRR++++s  ++L +l+Pk     +s K  ++    L +A  YIk L
  GRMZM2G169947_P01 27 RKEIERRRRQQMKSLCAKLASLIPKeH---YSSKdaMTQLGSLDEAATYIKRL 76
                       579**********************55...444446***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.8232276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-122788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-102790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-82882IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-82876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEMRAKKSSR SSTSNTSGST TTTAVERKEI ERRRRQQMKS LCAKLASLIP KEHYSSKDAM  60
TQLGSLDEAA TYIKRLKERV EELRHKSASA RLLAAGSGTR RGGGGGGAST SSAATTTASG  120
GAGSSEEAGR REDDMPPAVV EVRQHNDGSS LDVVLISSAA RPFKLHEVVT VLEEEGAETV  180
NANLSVAGTK IFYTIHCKVR TYVR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169947
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169947_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277510.0KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673815.11e-140transcription factor bHLH162
TrEMBLA0A060D1721e-144A0A060D172_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G169947_P011e-145(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-13bHLH family protein