PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G170079_P02

Common Name

ZEAMMB73_256741, Zm.146111

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 210aa MW: 21752.8 Da PI: 5.3205

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G170079_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.7	8.8e-12	154	198	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + GRMZM2G170079_P02 154 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPR 198 5999*********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-8	151	210	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.048	153	210	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.4E-14	155	207	No hit	No description
Pfam	PF00170	2.8E-10	155	200	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.36E-12	155	209	No hit	No description
CDD	cd14703	1.73E-26	156	207	No hit	No description
PROSITE pattern	PS00036	0	158	173	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAQQLPPRIP TEVHHWPEGG QHGAAAAWAD DFAEFAAARR GAHRRSLSDS VAFVEVAPAD 60 GGAGEFDRLD DDQLLSMFPP DEAGGGGSSA AGSENGGSSD SDGDKRGARG GPAGGAPSTG 120 SGGGEQNGVV DAQAPAATGG QAAVVASTEL IRDPKRVKRI LANRQSAQRS RVRKLQYISE 180 LERSVTTLQN EVSVLSPRVA FLDQQRTILS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.75281	1e-111	sheath\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G170079

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269\|PubMed:18065552}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G170079_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX469927	0.0	JX469927.1 Zea mays subsp. mays clone UT3185 bZIP-type transcription factor mRNA, partial cds.
GenBank	KJ726785	0.0	KJ726785.1 Zea mays clone pUT1861 bZIP transcription factor (bZIP20) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008657219.1	1e-147	basic leucine zipper 6
Swissprot	Q5JMK6	9e-68	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A1D6GBD7	1e-146	A0A1D6GBD7_MAIZE; BZIP-type transcription factor
STRING	GRMZM2G170079_P02	1e-147	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-28	bZIP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G170079_P02

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]