PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G170322_P01
Common NameLOC100273616, ZEAMMB73_574361
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 402aa    MW: 42577.7 Da    PI: 10.2528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G170322_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161660147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r rWT+eE+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  GRMZM2G170322_P01 16 RERWTEEEHGRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 60
                       78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-151064IPR009057Homeodomain-like
PROSITE profilePS5129419.4771165IPR017930Myb domain
TIGRFAMsTIGR015579.1E-161463IPR006447Myb domain, plants
SMARTSM007171.7E-111563IPR001005SANT/Myb domain
PfamPF002491.8E-131659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-91656IPR009057Homeodomain-like
CDDcd001676.05E-91861No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MPCLEARKPY TITKRRERWT EEEHGRFLEA LQLHGRAWRR IQEHIGTKTA VQIRSHAQKF  60
FTKVVRESSP GSNASAGAAP AIQIPPPRPK RKPAHPYPRK ADGAAKKPAP ELKRLEKTSL  120
RDRVRDEGSP TSVLASARTA LRAEVSGSVV ANSSSASRSP ALSDAGSNER GDGGGSLASS  180
VDREDGCASP RTRAPCTKVL CDAHEVSRLG SGAPVVKLFG NKVVVVKVKD LETDTPPASV  240
AEAARNGSPT NGAAGASSWK PWPELTCLVP RRDGFAAQPI VSPPCAVFYY PQASAQEHQQ  300
ASEPLDHRRA QREGSSPTGS SVASSAAAES RHGPGQENAS DGYAALRAAI PRPTKRASSA  360
SFGGRGFVPY KRCAAESEAA RPVALALAPG EEADGDLTRL CL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.316490.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G170322
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G170322_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357940.0BT035794.1 Zea mays full-length cDNA clone ZM_BFb0083J02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676827.10.0putative MYB DNA-binding domain superfamily protein isoform X3
TrEMBLB4FFA60.0B4FFA6_MAIZE; Uncharacterized protein
STRINGGRMZM2G170322_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-31MYB_related family protein