PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171428_P01
Common NameLOC103639063, ZEAMMB73_024069, Zm.10430
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 497aa    MW: 52589.6 Da    PI: 7.2379
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171428_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31212268259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkversa ++++++i+Y+g+Hnh+
  GRMZM2G171428_P01 212 DDGYNWRKYGQKAVKGGEYPRSYYKCTHTSCPVKKKVERSA-EGHITQIIYRGQHNHQ 268
                        8****************************************.***************8 PP
2WRKY104.74.8e-33380438159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYYrCt++gC vkk++ers++dpk+v++tYeg+H h+
  GRMZM2G171428_P01 380 LDDGYRWRKYGQKVVKGNPYPRSYYRCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 438
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-28208270IPR003657WRKY domain
SuperFamilySSF1182906.8E-25210270IPR003657WRKY domain
SMARTSM007743.0E-33211269IPR003657WRKY domain
PfamPF031066.7E-24212268IPR003657WRKY domain
PROSITE profilePS5081123.319212270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-36367440IPR003657WRKY domain
SuperFamilySSF1182902.48E-29372440IPR003657WRKY domain
PROSITE profilePS5081137.287375440IPR003657WRKY domain
SMARTSM007745.9E-39380439IPR003657WRKY domain
PfamPF031061.2E-25381438IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAAREASAPA PASPHAGDGP GRPPRPTLAL PPRSAVESLF ATGASSSAGA AETSPGPLTL  60
AAALFPDASS PAFHGSFTQL LVGAIGSPAV PSPPSPFAVP PGLSPATLFG SPGLFSPTGS  120
FEMSHQQALA QVTAQAVHSQ YNMINHTDYS IPFSSTTAPA LITAQHANSS ANVASAQEKP  180
ALPSHAGNSN IESNEVSQGL KTSAPTFDKP ADDGYNWRKY GQKAVKGGEY PRSYYKCTHT  240
SCPVKKKVER SAEGHITQII YRGQHNHQRP PKRRSKDGGG PLNEADVLHE NEDISTRSEP  300
GSQEHSGKHE GSNDGILGPS VSRRGGGDEQ LSGSSDSDEE QDDEQRAGDE DPGYANANKR  360
HVPTPAQRII VQTNSEVDLL DDGYRWRKYG QKVVKGNPYP RSYYRCTYQG CDVKKHIERS  420
SQDPKAVITT YEGKHSHDVP AVRNGSHAAA NANGSSSTSL PVPHRVHSSA SSSRRAAELQ  480
SASSASSMLL KEENEIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37212441878Probable WRKY transcription factor 4
2lex_A1e-37212441878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273RPPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.160680.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171428
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171428_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577240.0EU957724.1 Zea mays clone 1612894 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660080.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-108WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLK7VL660.0K7VL66_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G171428_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-78WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]