PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171468_P03
Common NameIDP150
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 157aa    MW: 17006.7 Da    PI: 6.3464
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171468_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-322479156
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
                       k+r++W+peLH+rFv a+++LGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  GRMZM2G171468_P03 24 KARRCWSPELHRRFVAALHELGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 79
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7672181IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-292182IPR009057Homeodomain-like
SuperFamilySSF466894.12E-172282IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-262479IPR006447Myb domain, plants
PfamPF002492.1E-82677IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPPCGSEVNN MHSQAQQQQQ ASRKARRCWS PELHRRFVAA LHELGGPQVA TPKQIREVMQ  60
VDGLTNDEVK SHLQKYRLHN RRSSPGAAAA PVSQSIMLVD GVWAAQEQSS GSQSGSRQGP  120
LQFSRAGMAV GGGDDSSSSD DDEDDDKSED GYSLKCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-162477154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-162477154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-162477154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-162477154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-162477255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.190760.0cell culture| ear| endosperm| meristem| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171468
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171468_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558530.0BT055853.1 Zea mays full-length cDNA clone ZM_BFb0336B03 mRNA, complete cds.
GenBankEU9744990.0EU974499.1 Zea mays clone 450772 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146647.11e-111uncharacterized LOC100280246
SwissprotQ9ZQ852e-34EFM_ARATH; Myb family transcription factor EFM
TrEMBLB6UB841e-109B6UB84_MAIZE; DNA binding protein
TrEMBLB8A2R11e-111B8A2R1_MAIZE; Uncharacterized protein
STRINGGRMZM2G171468_P011e-110(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-34G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]