PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171569_P01
Common NameEREB64, Zm.13801
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 307aa    MW: 33195.8 Da    PI: 10.0591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171569_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-2197146255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr+++ +grW+AeIrdp        +r++lg+f+taeeAa+a++aar++++g
  GRMZM2G171569_P01  97 RFTGVRRRP-WGRWAAEIRDP-----MlrRRVWLGTFDTAEEAAAAYVAARLRIRG 146
                        589******.**********9.....445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.84E-1596150No hitNo description
SMARTSM003805.9E-2497161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2397150IPR001471AP2/ERF domain
PROSITE profilePS5103220.77197155IPR001471AP2/ERF domain
PfamPF008476.2E-1497146IPR001471AP2/ERF domain
PRINTSPR003677.7E-1098109IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1798149IPR016177DNA-binding domain
PRINTSPR003677.7E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDPSLKEEVM KAVEEARSAS VPRCRVVRII VHDEDATDSS SSEDEDEDEA GERASPHPGS  60
PSASASAGSV KRSRVLLQSA GCGAEEDEEE EEGEGARFTG VRRRPWGRWA AEIRDPMLRR  120
RVWLGTFDTA EEAAAAYVAA RLRIRGPKAS GSNLLPSGAH AAGSLPPPAH RPPLPPRPPP  180
PPQREKQQCP PPPLLPPKKQ QYPPPPLLPP KKQLYPPPLP LPPKKQQHHH PPPPLPTLPP  240
KKRLASPPLL PGSEKQWVIS SPSEPRFVPL PVWALMSGSG KRKKRSGCGG RVPALHTPAA  300
AEETGRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1394149258ATERF1
3gcc_A3e-1394149258ATERF1
5wx9_A3e-13941491167Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.138010.0endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171569
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171569_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425641e-125BT042564.1 Zea mays full-length cDNA clone ZM_BFb0339C12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652196.20.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor ABI4
TrEMBLA0A3L6E1711e-107A0A3L6E171_MAIZE; Ethylene-responsive transcription factor CRF3
STRINGGRMZM2G171569_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2281033
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.14e-15cytokinin response factor 3