PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171818_P01
Common NameLOC100285905
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 448aa    MW: 46820.9 Da    PI: 7.8552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171818_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09288335455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G171818_P01 288 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 335
                        8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-16282350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-11282339No hitNo description
Gene3DG3DSA:4.10.280.107.5E-16284348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.809284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6288335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSSRTHHPCF ASVESWEQAA MAHDGFLGDL ACPLPLAHAA TAAPFDPLRV HVAHALTGAG  60
AGWEHDAATG ALVPSRPRPL SPSSLAAATA VVVGGGGDAV EAALMEQLAS RLGVSVPSPP  120
PSRYASCHGT PAGSPSKSAA PWVLAGDAAP AERATGLPCF PASCGELSRV PSCQSSLLGE  180
HAPTPAPAPL PGAAKQHASD GSCSDGPCRK RKASGGKAKD VVTTATPKSR EPETMAKRRK  240
LSTDAARDEA GSHGNGKGKE VAPAAEPEPQ PPKDYIHVRA RRGQATDSHS LAERVRREKI  300
SERMKLLQDL VPGCSKVTGK AVMLDEIINY VQSLQCQVEF LSMKLSTVDP RRELDVGCFV  360
VPKDDVTMQA NRLCAPATSS SSSAFCYAAR SVVTNAKGFE TPLPLANHGV AADDRPLERR  420
TRDAGPQAGS LWEEDDLQSL VLMGFRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.283450.0root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171818
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171818_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745730.0EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152266.10.0BHLH transcription factor
TrEMBLA0A1D6F5G20.0A0A1D6F5G2_MAIZE; BHLH transcription factor
STRINGGRMZM2G171818_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-49bHLH family protein