PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171942_P01
Common NameC3H37, LOC100276294, ZEAMMB73_838003
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 257aa    MW: 27942.1 Da    PI: 8.3783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171942_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.6e-0776100126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykt+lC  f + G C y + C+FaHg
  GRMZM2G171942_P01  76 YKTRLCEKFEA-GKCAYEGGCTFAHG 100
                        9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-1469107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-774105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.91575102IPR000571Zinc finger, CCCH-type
SMARTSM003560.08675101IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-476100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.488138166IPR000571Zinc finger, CCCH-type
SMARTSM003560.38138165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5139163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5141165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MERERNAATA GAGRWEAPDG VIVLPVGSAA PQQGRQKEHQ YQQRKREMER EREQQDPGAR  60
EGVLGLDPQP PEKVYYKTRL CEKFEAGKCA YEGGCTFAHG SEELRPPLPL PLLTSLVRRK  120
SPLPSSSPGA AASSPHGGYC VRVCFEFRDT GACHRGDRCA FVHASTTEMP FPGGPRSMEY  180
ALRNSSSYAK AYSPGSTAAA YRNSSSTSTS NYAPATTRAF QSVSADAAGE GGCKATRLEL  240
LGRKKMNDIY GDWPEQD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1245270.0endosperm| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171942
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171942_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9612010.0EU961201.1 Zea mays clone 233418 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143590.10.0uncharacterized protein LOC100276294
TrEMBLB6T8860.0B6T886_MAIZE; C3H transcription factor
STRINGGRMZM2G171942_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-07C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]