PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173124_P04
Common NameLOC103634911, ZEAMMB73_899917
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 378aa    MW: 40178.9 Da    PI: 6.9016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173124_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-08116137426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        + C++f++ G C++Gd C FaHg
  GRMZM2G173124_P04 116 AACPDFRK-GGCRRGDACDFAHG 137
                        78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.0E-5112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075113139IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5116137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5118139IPR000571Zinc finger, CCCH-type
SMARTSM0035612147170IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258147171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMMMGEGVSV PPWSHHVPVS GVDAGVGGDE MTPYLLAALR QYLPCNDAGA AEADDEEAAA  60
MAAGVDGYGC DEFRMYEFKV RRCARARSHD WTECPFAHPG EKARRRDPRR YHYSGAACPD  120
FRKGGCRRGD ACDFAHGVFE CWLHPARYRT QPCKDGTACR RRVCFFAHTP DQLRVLPPTP  180
QQSSASPRGA GALPESYDGS PLRRQAFETY LTKSIVSSSP TSTLLSPPKT PPSESPPLSP  240
DGAAAAFRRG SWPGAGSPVN DVLASLRQLR LGTASSSPSG GWGGYPASAA AYGSPTAGGL  300
YSLPSTPTAL ATASGYMPNL EPLDVSFGGD EEPVERVESG RALRAKVFER LSREGAVSCY  360
PAAGTGGPDV GWVSDLIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.975480.0cell culture| cell lignification| ear| embryo| endosperm| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173124
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173124_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852170.0BT085217.2 Zea mays full-length cDNA clone ZM_BFb0336L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655700.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLK0DCN30.0K0DCN3_MAIZE; C3H47 C3H type transcription factor (Fragment)
TrEMBLK7UQY20.0K7UQY2_MAIZE; C3H47 C3H type transcription factor
STRINGGRMZM2G173124_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-83C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]