PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173198_P01
Common NameLOC103635832, ZEAMMB73_340549
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 298aa    MW: 33508.8 Da    PI: 8.2079
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173198_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR22.42.6e-0711401140
                TCR 11 skClkkYCeCfaagkkCseeCkCedCkNke 40
                       + C+  YC Cfa g +Cs++C C+ C+Nke
  GRMZM2G173198_P01 11 TVCICSYCPCFAGGGYCSDKCGCQPCFNKE 40
                       67**************************98 PP
2TCR50.63.7e-1688124339
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++gCnCkks+ClkkYC+C+++g+ Cs  C+C+dC+N 
  GRMZM2G173198_P01  88 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 124
                        589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163426.2531126IPR005172CRC domain
SMARTSM011140.0043442IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011147.7E-1586127IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.7E-1189123IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLCKSHKYTI TVCICSYCPC FAGGGYCSDK CGCQPCFNKE AFSETVQTTR KVLLSRQKRM  60
SMKINRRPEA NAEPMEDAHH SSSSTPPRRG CNCKKSSCLK KYCDCYQDGT GCSLFCRCDD  120
CQNPFGKNDG IIADDSKRYL YTGADLDHSE GEHDFVVERS PRLQSPMSKE SSFHQTPPHL  180
RASSRDAHVF PQAVSQWQAL PRSWHCSNKR NGNDRAMDDS SANGNYKSSS HDWQMSKLED  240
GYSISRCVQI LNGMVELSQV EKSVAPDVFL LPGNREIFVS LGGDVRAMWL KRKIQHLA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.970340.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173198
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173198_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9606930.0EU960693.1 Zea mays clone 227552 CXC domain containing TSO1-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148761.10.0uncharacterized protein LOC100282378
TrEMBLB6T6S80.0B6T6S8_MAIZE; CPP transcription factor
STRINGGRMZM2G173198_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Representative plantOGRP1200246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-31Tesmin/TSO1-like CXC domain-containing protein