PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173321_P02
Common NameLOC100284698, ZEAMMB73_546295
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 232aa    MW: 26769.5 Da    PI: 9.235
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173321_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16134224199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f+k +t+s+v+   +l lp++f++++  +k ++ t+tl de+  +s++++l   k++    l++GW++F+ +++L +gD +vF+l++r++f 
  GRMZM2G173321_P02 134 FIKPMTQSHVTGGFWLGLPNHFCRKYL-PK-RDETITLLDEDDnESYTLYL-ALKRG----LSAGWRGFAIQHKLVDGDCLVFQLTERTKF- 217
                        89************************5.33.5669*****88835666666.34444....9**********************9988888. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                         +v ++r+
  GRMZM2G173321_P02 218 -KVIIIRA 224
                        .7777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-20126225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-23127225IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-24132223No hitNo description
SMARTSM010191.6E-18134225IPR003340B3 DNA binding domain
PfamPF023621.0E-14134224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308134225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAEATAYEEQ RRRQVEANKR KLEELQLHYL SAAVREAAAA AKPSPVKKRK ARVPLDAADS  60
VMEPLRRSGR LANLPDKSVH REEVPTFWRK IRRTYGSVRK DLENRVYATD EARSYAICKA  120
EEVEQELDSS FPVFIKPMTQ SHVTGGFWLG LPNHFCRKYL PKRDETITLL DEDDNESYTL  180
YLALKRGLSA GWRGFAIQHK LVDGDCLVFQ LTERTKFKVI IIRASSYYES ED
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.123050.0cell lignification| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173321
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173321_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656020.0BT065602.1 Zea mays full-length cDNA clone ZM_BFb0334P07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400686.11e-173DNA binding protein isoform X3
SwissprotQ69V361e-116Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLC0PBD31e-171C0PBD3_MAIZE; Uncharacterized protein
TrEMBLK0DCS51e-171K0DCS5_MAIZE; ABI51 ABI3VP1 type transcription factor (Fragment)
STRINGGRMZM2G173321_P021e-172(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]