PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173771_P01
Common NameZEAMMB73_214192, Zm.128383
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 230aa    MW: 23962.7 Da    PI: 8.4977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173771_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-2095145155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y GVr+++ +g+W+AeIrdp+    r +r +lg+f+tae+Aa+a++aa+ +l+g
  GRMZM2G173771_P01  95 SSYMGVRRRP-WGKWAAEIRDPR----RaARKWLGTFDTAEDAARAYDAAAVELRG 145
                        6799******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-2295154IPR016177DNA-binding domain
PfamPF008472.2E-1395145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-3196154IPR001471AP2/ERF domain
SMARTSM003801.0E-3196159IPR001471AP2/ERF domain
PROSITE profilePS5103224.81696153IPR001471AP2/ERF domain
CDDcd000181.19E-1797154No hitNo description
PRINTSPR003672.6E-1097108IPR001471AP2/ERF domain
PRINTSPR003672.6E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTSRLESGGF QLPNTEQENA LLLRALISVV SGDTAAASLV PEAAAAEAPA AAASACGCPG  60
GCDLAAASSS DSDGAECSAS GGGAGKRRRR RSRASSYMGV RRRPWGKWAA EIRDPRRAAR  120
KWLGTFDTAE DAARAYDAAA VELRGRRAKL NFPDAAAAAA ARDVQPRRPL PGQSLRENCG  180
SNAASPLHVA VARAPTTLQG TGPAPPKDQD IWDGLNEIMT MDDGSFWSMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20961531472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590KRRRRR
286102RRRRRSRASSYMGVRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173771
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173771_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9538020.0EU953802.1 Zea mays clone 1446523 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147181.21e-162ethylene-responsive element binding protein 2
TrEMBLK7U9V51e-161K7U9V5_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G173771_P011e-162(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-18ERF family protein