PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G174610_P02
Common NameLOC100273110
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 133aa    MW: 15163 Da    PI: 4.9207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G174610_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17184596
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                       +++s+v++  +l lp +f++++  +  +++ ++lede+g +++  +   +++ +  l++GW++F+  ++L+egD++vF+l ++++f  ++ +
  GRMZM2G174610_P02  1 MVRSHVSSCFWLGLPISFCKNNL-P-SKEFRMVLEDEEGLEFDAVY--IGNRTG--LSGGWRGFAMHHNLEEGDSLVFELAEHDKF--KIYI 84
                       57899**************7764.4.46689***************..555444..***********************9987888..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.4E-15188IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21188IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-19186IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-16185IPR003340B3 DNA binding domain
CDDcd100179.32E-22186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVRSHVSSCF WLGLPISFCK NNLPSKEFRM VLEDEEGLEF DAVYIGNRTG LSGGWRGFAM  60
HHNLEEGDSL VFELAEHDKF KIYIIKAIDD DVKEAEPDDK NDNGVTKEEP DQEESPVAEP  120
PKGAKRRKLR GRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126PKGAKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.264400.0ear| embryo| endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G174610
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G174610_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402170.0BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds.
GenBankBT0683840.0BT068384.1 Zea mays full-length cDNA clone ZM_BFb0147P17 mRNA, complete cds.
GenBankEU9452620.0EU945262.1 Zea mays clone 246231 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141031.18e-96uncharacterized protein LOC100273110
SwissprotQ5KQI42e-67Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A3L6EG141e-93A0A3L6EG14_MAIZE; B3 domain-containing protein
TrEMBLB4FSX92e-94B4FSX9_MAIZE; Putative B3 domain-containing protein
STRINGGRMZM2G174610_P013e-95(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-31B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]