PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G174776_P01
Common NameCA5P14, LOC100277570, ZEAMMB73_487817
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 202aa    MW: 21530.4 Da    PI: 5.863
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G174776_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC168.86.8e-53621641100
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql+ fw++q   ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt++f
  GRMZM2G174776_P01  62 QLQLFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTEVF 153
                        89******99999******************************************************************************* PP

              NF-YC  90 dflvdivprde 100
                        dflvdivprde
  GRMZM2G174776_P01 154 DFLVDIVPRDE 164
                        *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-3053156IPR009072Histone-fold
PfamPF008082.0E-2184147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-3685162IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEPNSSIPPP VMGAAVAYPP AAGAAYSAGP YAHAHAALGA LYPPPPAPGP PSSHQGGAAA  60
AQLQLFWAEQ YREIEATTDF KNHNLPLARI KKIMKADEDV RMIAAEAPVV FARACEMFIL  120
ELTHRGWAHA EENKRRTLQK SDIAAAVART EVFDFLVDIV PRDEPRDADP AAAAMGAAAP  180
GIPQHPAAAD PTTMGYYYVQ PQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B9e-5770162395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RRTLQKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.229400.0aleurone| ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G174776
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G174776_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270070.0KJ727007.1 Zea mays clone pUT3983 CCAAT-HAP5 transcription factor (CA5P14) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144564.21e-144uncharacterized protein LOC100277570
SwissprotQ9XE332e-70NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A3L6F5H01e-143A0A3L6F5H0_MAIZE; Nuclear transcription factor Y subunit C-6
TrEMBLK7V3951e-143K7V395_MAIZE; CCAAT-HAP5 transcription factor
STRINGGRMZM2G174776_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-58nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]