PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G174917_P01
Common NameEREB47, Zm.41327
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 252aa    MW: 27243.3 Da    PI: 10.1189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G174917_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-1667116255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr +k +g+WvAeIr+p +   r+r++lg++ ta  Aa+a++ a  +l+g
  GRMZM2G174917_P01  67 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATAVAAARAYDTAVFYLRG 116
                        69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-3066125IPR001471AP2/ERF domain
PROSITE profilePS5103222.73467124IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2167126IPR016177DNA-binding domain
PfamPF008478.1E-1067116IPR001471AP2/ERF domain
CDDcd000184.11E-2167125No hitNo description
SMARTSM003802.5E-3667130IPR001471AP2/ERF domain
PRINTSPR003676.7E-126879IPR001471AP2/ERF domain
PRINTSPR003676.7E-12106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQGEYRSSSE ESAAAAAAAA MAPLAAAAAA AVKMEAEQAA MASAAAPQLG SAHQHQHQHQ  60
QMQPRRQYRG VRMRKWGKWV AEIREPHKRT RIWLGSYATA VAAARAYDTA VFYLRGRSAR  120
LNFPDEIPSL APSEGEGDGD GGEPARDPAD GGGGGTLSAA SIRKKAIEVG SRVDALQTGM  180
MVPPPHHRER QRHHHHHHHH LPQLRMHAAA AEAAAAEHRQ EVKQSPQRPA WSGRVKNPDL  240
NRAPSPESSD AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1566129468ATERF1
3gcc_A5e-1566129468ATERF1
5wx9_A2e-14671261474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.413270.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G174917
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G174917_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278780.0KJ727878.1 Zea mays clone pUT5971 AP2-EREBP transcription factor (EREB47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150418.21e-180uncharacterized protein LOC100284048
TrEMBLA0A060D7N51e-178A0A060D7N5_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G174917_P011e-179(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.18e-27DREB and EAR motif protein 3