PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G177693_P02
Common NameLOC100279632
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 193aa    MW: 21375.3 Da    PI: 10.1615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G177693_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0580100323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C++Cgk F r  nL+ H r H
  GRMZM2G177693_P02  80 CEICGKGFQRDQNLQLHRRGH 100
                        *******************88 PP
2zf-C2H2110.0013156178123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  GRMZM2G177693_P02 156 WKCDKCSKRYAVHSDWKAHSKIC 178
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.43E-877100No hitNo description
PROSITE profilePS5015711.48978100IPR007087Zinc finger, C2H2
SMARTSM003550.07678100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355130121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.43E-8151176No hitNo description
SMARTSM00355150156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MFHHQQELLQ AEAAAADRES SMSNNLTSSA PGGPNAAPAA AAATGNNNKR KRSLPGNPDP  60
EAEVVALSPA TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG AGKEAQRKKV  120
YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKRYAVHSD WKAHSKICGT  180
REYKCDCGTV FSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-21152193344Zinc finger protein JACKDAW
5b3h_F7e-21152193344Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.311960.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G177693
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G177693_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379030.0BT037903.1 Zea mays full-length cDNA clone ZM_BFb0201N10 mRNA, complete cds.
GenBankEU9595730.0EU959573.1 Zea mays clone 218663 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672711.11e-142uncharacterized protein LOC100279632 isoform X1
SwissprotQ9SCQ65e-91IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A096T1521e-140A0A096T152_MAIZE; Protein indeterminate-domain 9
TrEMBLA0A3L6FBN91e-135A0A3L6FBN9_MAIZE; ATP-dependent zinc metalloprotease FTSH 5, mitochondrial
TrEMBLB4FLB51e-142B4FLB5_MAIZE; Uncharacterized protein
STRINGGRMZM2G177693_P011e-141(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-90C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]