PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G178261_P04
Common Namecl3497_1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 233aa    MW: 24958.8 Da    PI: 9.3503
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G178261_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.4e-24115158245
                WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  GRMZM2G178261_P04 115 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 158
                        69***************************************986 PP
2QLQ58.52e-204883237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       +FT++Q+ +L++Q+l+yKyLaan P+P+ Ll +i++
  GRMZM2G178261_P04 48 PFTPSQWIELEHQALIYKYLAANSPIPHSLLIPIRR 83
                       9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.1E-114783IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.9754883IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.7E-154882IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.65114158IPR014977WRC domain
PfamPF088791.3E-20116157IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MFLAAPCWLP PFCCSSLLTM PACLLPAGLS SVSLSTSMQG AMARVRAPFT PSQWIELEHQ  60
ALIYKYLAAN SPIPHSLLIP IRRSLAASPY PPSYFGTSTL GWGSFQLGYS GNADLEPGRC  120
RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKHVEGQP GHAAKAMSAV AAAAAAAAQP  180
AALAGAGAPA AGLTVNQHQL PAKSYATGAT DPCSLQYNRY FLLLCLCSKC CNT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.419310.0ear| embryo| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G178261
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G178261_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0637590.0BT063759.1 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408905.11e-137uncharacterized protein LOC100285734 isoform X1
SwissprotQ6AWY31e-89GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLC0P6401e-158C0P640_MAIZE; Growth-regulating factor 2
STRINGGRMZM2G178261_P011e-135(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-50growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]