PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G178603_P01

Common Name

LOC103627461, TCP16

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

TCP

Protein Properties

Length: 220aa MW: 22761.6 Da PI: 10.5719

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G178603_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.8	1.1e-35	53	206	8	112
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec..eaesssssasnsssg...... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a s++ +++ssss ++++ + GRMZM2G178603_P01 53 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAvfvSSSapSTSSSSSHYHHQQ-Qatvvlg 143 59********************************************************99999444222322222222222222.2467777 PP TCP 89 .......................................kaaksaa.kskksqksaasalnlak 112 + a++aa + + + ++++lnl + GRMZM2G178603_P01 144 krpreegdaagsvfwaalpaaprateawgfspleaqaaaA-AAAAAyVPMAQAQAQHHHLNLLA 206 7777788888888888888877777777777777766532.22222233333333333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.032	53	107	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.0E-32	53	138	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MATTREVSSS AAAMFHVYQT IPMPTPSTAA AGGGGAMVSV SAPAKPGKKE GGGKDRHSKV 60 NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSIVAATGS GTTPAVFVSS 120 SAPSTSSSSS HYHHQQQATV VLGKRPREEG DAAGSVFWAA LPAAPRATEA WGFSPLEAQA 180 AAAAAAAAYV PMAQAQAQHH HLNLLAALSG AARRAEEETR

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G178603

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G178603_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727699	0.0	KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008645973.1	1e-157	transcription factor TCP21
Swissprot	Q9FMX2	9e-42	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A060D1M6	1e-155	A0A060D1M6_MAIZE; TCP transcription factor (Fragment)
STRING	GRMZM2G178603_P01	1e-156	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-32	TCP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G178603_P01
Entrez Gene	103627461