PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G178741_P02
Common NameLOC100502458, ZEAMMB73_480111
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 344aa    MW: 37573.1 Da    PI: 6.5068
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G178741_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-18115168356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ eq+++Le+ Fe  +++ ae++ +LA+ lgL+ rqV +WFqNrRa++k
  GRMZM2G178741_P02 115 KKRRLNVEQVRTLEKNFELGNKLEAERKLQLARALGLQPRQVAIWFQNRRARWK 168
                        4568999**********************************************9 PP
2HD-ZIP_I/II124.55e-40114204191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekkrrl+ eqv++LE++Fe  +kLe erK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da+k++n++L +++++L++e+
  GRMZM2G178741_P02 114 EKKRRLNVEQVRTLEKNFELGNKLEAERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAVKADNDALLSHNKKLQAEI 204
                        69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-19106172IPR009057Homeodomain-like
PROSITE profilePS5007116.763110170IPR001356Homeobox domain
SMARTSM003891.9E-17113174IPR001356Homeobox domain
CDDcd000862.74E-17115171No hitNo description
PfamPF000462.5E-15115168IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-18117177IPR009057Homeodomain-like
PRINTSPR000311.7E-5141150IPR000047Helix-turn-helix motif
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5150166IPR000047Helix-turn-helix motif
PfamPF021838.8E-14170210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRPMASNGMA SSLSPFFPPN FLLQMQQTPS DHDPQEHHHL PAPPLHLHHN PFLPSSQCPS  60
LQDFRGMAPM LRKRPTMYCG ADDVGVGGEE ASCGATNEDE VSDDGSLQAV GPGEKKRRLN  120
VEQVRTLEKN FELGNKLEAE RKLQLARALG LQPRQVAIWF QNRRARWKTK QLEKDYDALR  180
RQLDAVKADN DALLSHNKKL QAEILALKGR EAAGGSSELI NLNKETEASC SNRSEDSSEI  240
NLDISRTPPA SEGPMDHPPP PPPHHAAGGG LIPFYPSVGG RHSIAAGVGM DQLLHASTPK  300
LEQHGDGCAV AVQAAETAGS FGNLLCGVDE TPPFWPWADH HHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARWKTKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G178741
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G178741_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882340.0BT088234.1 Zea mays full-length cDNA clone ZM_BFc0086K06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183865.10.0uncharacterized LOC100502458
SwissprotQ8S7W91e-132HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLC4JBN70.0C4JBN7_MAIZE; Homeobox-leucine zipper protein ATHB-23
TrEMBLK4JRS60.0K4JRS6_MAIZE; HB-type transcription factor (Fragment)
STRINGGRMZM2G178741_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-78HD-ZIP family protein