PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179021_P01
Common NameLOC103633089
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 221aa    MW: 23231.9 Da    PI: 6.9201
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179021_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70296.74.5e-30491864154
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 
                         +++CqdCG +ak       C  CC  rgf C  h k  +vpa++ ++rqq+laa   +         skr+++   +  s +++t++ss +
  GRMZM2G179021_P01  49 ASIRCQDCGHRAKA----YYCAHCCSDRGFVCPGHAKTPYVPASQCSKRQQRLAAVDVEL-----MPISKRPHR--PALPSVAAHTTTSSVD 129
                        5789********95....56999*****************************99985544.....345555554..4667777788888888 PP

             DUF702  96 skkelet.sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        ++  +++ +++ +evs +avfr+vr+++    e ++aY t+++i+Ghvf+G+Lyd G+++
  GRMZM2G179021_P01 130 QPIVTPAlQRFAREVSLDAVFRRVRLGGP---EPDVAYYTTITIAGHVFRGVLYDVGPHS 186
                        8877765166****************985...5789*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.7E-3350185IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016246.0E-13140184IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MHPFDAASFF STTPEGGSFD ARQQEEELAG AASSSPTPSR GTRAGVENAS IRCQDCGHRA  60
KAYYCAHCCS DRGFVCPGHA KTPYVPASQC SKRQQRLAAV DVELMPISKR PHRPALPSVA  120
AHTTTSSVDQ PIVTPALQRF AREVSLDAVF RRVRLGGPEP DVAYYTTITI AGHVFRGVLY  180
DVGPHSGSGS TAASDTDGSG EEVGSSLTTA GGSCLDLTLG M
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179021
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179021_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652989.11e-161protein SHI RELATED SEQUENCE 1
TrEMBLA0A1D6I9Q91e-159A0A1D6I9Q9_MAIZE; Protein SHI RELATED SEQUENCE 1
STRINGGRMZM2G179021_P011e-160(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2105377
Representative plantOGRP1959722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-22Lateral root primordium (LRP) protein-related