PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179049_P01
Common NameZm.24865
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 75aa    MW: 8080.37 Da    PI: 7.6177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179049_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.22e-161160149
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k 49
                       lppGfrFhPtdeelvv yL++k+ +++l++  vi+ v d+  ++PwdLp +
  GRMZM2G179049_P01 11 LPPGFRFHPTDEELVVLYLRRKALARPLPA-AVIPVVhDVAGLDPWDLPgA 60
                       79****************************.8899998**********943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-19661IPR003441NAC domain
PROSITE profilePS5100520.0471175IPR003441NAC domain
PfamPF023654.5E-81255IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MERPAQAPTQ LPPGFRFHPT DEELVVLYLR RKALARPLPA AVIPVVHDVA GLDPWDLPGA  60
CARALHLSAS TFGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-14258661Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.248651e-127meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179049
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179049_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0546821e-124BT054682.2 Zea mays full-length cDNA clone ZM_BFb0076H15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307391.14e-35uncharacterized protein LOC107275227
SwissprotO227981e-20NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A1D6ESW38e-34A0A1D6ESW3_MAIZE; NAC domain-containing protein 18
TrEMBLB6U3F18e-34B6U3F1_MAIZE; NAC domain-containing protein 18
STRINGGRMZM2G179049_P022e-34(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-14NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]