PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180168_P01
Common NameABI23, ZEAMMB73_740283, Zm.32888
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 249aa    MW: 27133.2 Da    PI: 6.7196
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180168_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.72.2e-2861151192
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        f+kvltpsdv+k++rlv+pk++ae++       ++s++l ++d+ g  W+++++y+++s++yv+tkGW++Fv+a +L +gD+v+F+++g  +
  GRMZM2G180168_P01  61 FDKVLTPSDVGKLNRLVVPKQHAERFfpaA--GAGSTQLCFQDRGGALWQFRYSYWGSSQSYVMTKGWSRFVRAARLAAGDTVTFSRSG--G 148
                        89************************9753..357889************************************************554..5 PP

                        E.. CS
                 B3  90 fel 92 
                        +++
  GRMZM2G180168_P01 149 GRY 151
                        544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3654150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-2858156IPR015300DNA-binding pseudobarrel domain
CDDcd100175.56E-2759153No hitNo description
PROSITE profilePS5086314.52261159IPR003340B3 DNA binding domain
PfamPF023626.4E-2661150IPR003340B3 DNA binding domain
SMARTSM010197.5E-2261163IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLHMDLSLGT LVEVEDSQEV QEEDNNLYKQ QRALGQDLHR RQGVSGGGPS HSHGVEREHM  60
FDKVLTPSDV GKLNRLVVPK QHAERFFPAA GAGSTQLCFQ DRGGALWQFR YSYWGSSQSY  120
VMTKGWSRFV RAARLAAGDT VTFSRSGGGR YFIEYRHCQR RRRDVDISFG DAATVPAWPR  180
PIVIGTAAMN NGGATVASAT IAGHDIEVAV APSGARSFRL FGFNVECSGD DAPAPAPAPA  240
EVEYVDGDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-41561563111B3 domain-containing transcription factor NGA1
5os9_B3e-41561563111B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180168
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180168_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284100.0KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664024.20.0putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD57e-68Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A3L6G9D20.0A0A3L6G9D2_MAIZE; Putative B3 domain-containing protein
TrEMBLK7TQV40.0K7TQV4_MAIZE; ABI3VP1 transcription factor
STRINGGRMZM2G180168_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Representative plantOGRP1448744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-44B3 family protein