PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180452_P05
Common NameLOC100381413
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 201aa    MW: 22595.3 Da    PI: 6.7172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180452_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-07163190330
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                         +h+ +Er RR++iN+++  L++l+P +
  GRMZM2G180452_P05 163 NSHSLAERFRREKINERMKLLQDLVPGC 190
                        58************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-9158192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-4158192No hitNo description
PROSITE profilePS5088811.331160201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-5163190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9163193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMYSPPRTDP DREEEQCFSI GSNLLTSLDH YHTMDFDEPV VSPMTNAGMQ EGVQLYSSTG  60
DAQLNRNMNT GKCLEDGKRK GSGEDSSSLR SLVRKLEASI AFSHRITLPL FHPTVHVNVL  120
LQGETSALQR EVSMECADEK AGDARAKRED YVHVRAKRGQ ATNSHSLAER FRREKINERM  180
KLLQDLVPGC NKADYRQGHD A
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180452
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180452_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681588.11e-142putative HLH DNA-binding domain superfamily protein isoform X3
RefseqXP_020393194.11e-142putative HLH DNA-binding domain superfamily protein isoform X10
TrEMBLA0A1D6JU831e-140A0A1D6JU83_MAIZE; Transcription factor bHLH62
TrEMBLA0A1D6JU861e-140A0A1D6JU86_MAIZE; Transcription factor bHLH62
TrEMBLA0A1D6JU891e-140A0A1D6JU89_MAIZE; Transcription factor bHLH62
TrEMBLA0A1D6JU911e-140A0A1D6JU91_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G180452_P031e-110(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.19e-22bHLH family protein